Programme
All lectures and PC labs will take place in the training room of the hotel Belcredi. This is the same hotel where the accomodation is.
There will be a digital projector with a VGA cable as well as a computer with PDF and MS Powerpoint viewers prepared for all lecturers.
| Aug 28 | (Sunday) | Arrival day |
| 19:00-20:00 | REGISTRATION at the hotel reception | |
| 20:00 | Welcome dinner in the venue restaurant | |
| Aug 29 | (Monday) | |
| 7:00-8:30 | Breakfast | |
| REGISTRATION at the hotel reception | ||
| 8:30-8:50 | Michal Kozubek | |
| Welcome | ||
| 8:50-10:10 | Václav Hlaváč | |
| Keynote lecture: Milestones of image analysis and computer vision | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Cris Luengo | |
| Introduction to DIPlib/DIPImage | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Petr Matula | |
| Introduction to mathematical morphology | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Petr Matula | |
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Cris Luengo, Václav Hlaváč, Jussi Tohka, Carolina Wählby, Petr Matula | |
| Aug 30 | (Tuesday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Petr Matula | |
| Introduction to mathematical morphology | ||
| PC Labs | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Cris Luengo | |
| Measurement | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Cris Luengo | |
| PC Labs | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Student self presentations | |
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Cris Luengo, Václav Hlaváč, Jussi Tohka, Arrate Muñoz-Barrutia, Alessandro Foi, Carolina Wählby, Petr Matula | |
| Aug 31 | (Wednesday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Carolina Wählby | |
| High-throughput screening, heterogeneity in measurements from biomedical image data, and machine learning | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Carolina Wählby | |
| High-throughput screening, heterogeneity in measurements from biomedical image data, and machine learning | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Carolina Wählby | |
| PC Labs | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Cris Luengo | |
| Radon/Hough transform | ||
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Cris Luengo, Václav Hlaváč, Jussi Tohka, Arrate Muñoz-Barrutia, Alessandro Foi, Carolina Wählby, Petr Matula | |
| Sep 1 | (Thursday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Jussi Tohka | |
| Markov random fields, graph cuts, and application in MRI | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Jussi Tohka | |
| PC Labs | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Alessandro Foi | |
| Modelling, estimation, and removal of signal-dependent noise | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Alessandro Foi | |
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Cris Luengo, Jussi Tohka, Arrate Muñoz-Barrutia, Alessandro Foi, Carolina Wählby, Petr Matula | |
| Sep 2 | (Friday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Alessandro Foi | |
| Modelling, estimation, and removal of signal-dependent noise | ||
| PC Labs | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Arrate Muñoz Barrutia | |
| Image filtering using B-splines | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Arrate Muñoz Barrutia | |
| Image filtering using B-splines | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Arrate Muñoz Barrutia | |
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Cris Luengo, Arrate Muñoz-Barrutia, Alessandro Foi | |
| Sep 3 | (Saturday) | |
| 7:00-8:30 | Breakfast | |
| 9:00 | Trip to Moravian Karst and the visit of Punkva Caves | |
| 17:00-18:00 | Panel discussion with†: Cris Luengo, Karl Rohr, Alessandro Foi, Petr Matula | |
| 18:00 | Evening party | |
| Sep 4 | (Sunday) | |
| 7:00-8:30 | Breakfast | |
| whole day | Free activities - tips for traveling | |
| 16:40-17:40 | Panel discussion with†: Cris Luengo, Karl Rohr, Alessandro Foi, Jan Kybic, Petr Matula | |
| 17:40-19:30 | Dinner | |
| Sep 5 | (Monday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Jan Kybic | |
| Image registration | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Jan Kybic | |
| Image registration | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Jan Kybic | |
| PC Labs | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Jan Kybic | |
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Karl Rohr, Antti Niemistö, Alessandro Foi, Stefan Wörz, Jan Kybic, Petr Matula | |
| Sep 6 | (Tuesday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Karl Rohr | |
| Tracking and registration for biomedical image analysis | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Stefan Wörz | |
| Model-based segmentation of 3D biomedical images | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Stefan Wörz | |
| Model-based segmentation of 3D biomedical images | ||
| PC Labs | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Stefan Wörz | |
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Karl Rohr, Antti Niemistö, Carlos Ortiz de Solórzano, Stefan Wörz, Petr Matula | |
| Sep 7 | (Wednesday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Carlos Ortiz de Solórzano | |
| Altas-based image segmentation | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Carlos Ortiz de Solórzano | |
| Altas-based image segmentation | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | David Svoboda | |
| Introduction to simulations | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Student poster session | |
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Karl Rohr, Antti Niemistö, Carlos Ortiz de Solórzano, Etienne Decencière, Stefan Wörz, Petr Matula | |
| Sep 8 | (Thursday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Etienne Decencière | |
| Image segmentation using MM and application in biomedical imaging | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Etienne Decencière | |
| Image segmentation using MM and application in biomedical imaging | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Etienne Decencière | |
| PC Labs | ||
| 15:40-16:00 | Coffee break | |
| 16:00-17:40 | Etienne Decencière | |
| PC Labs | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Karl Rohr, Antti Niemistö, Carlos Ortiz de Solórzano, Etienne Decencière, Stefan Wörz, Petr Matula | |
| Sep 9 | (Friday) | |
| 7:00-8:30 | Breakfast | |
| 8:30-10:10 | Antti Niemistö | |
| High-throughput live cell imaging, bright field segmentation, and tracking | ||
| 10:10-10:30 | Coffee break | |
| 10:30-12:10 | Antti Niemistö | |
| PC Labs | ||
| 12:10-14:00 | Lunch break | |
| 14:00-15:40 | Michal Kozubek | |
| Automated 3D confocal cell imaging | ||
| 15:40-16:00 | Coffee break | |
| 16:00-16:50 | Pavel Matula | |
| Applications of 3D confocal cell imaging | ||
| 16:50-17:40 | Michal Kozubek | |
| Closing | ||
| 17:40-19:30 | Dinner | |
| 8:30-17:40 | Panel discussion with†: Karl Rohr, Antti Niemistö, Etienne Decencière, Stefan Wörz, Petr Matula | |
| Sep 10 | (Saturday) | Departure day |
| 7:00-8:30 | Breakfast |
† A person is excused from panel discussion during breaks and presentation given by him/her.
Abstract of the keynote lecture
This introductory lecture to the Biomedical Image Analysis summer school aims at explaining the image processing, analysis and computer vision disciplines from their development-in-time perspective. The concepts, tasks formulations and principal contributions will be mentioned with links to principal contributions. The views of signal processing, image formation physics, human image perception, image processing, image analysis, mathematical morphology, 3D computer vision, image sequences understanding, etc. will be explicated. The links to neighboring disciplines of pattern recognition, machine learning, artificial intelligence, and computer graphics will be mentioned too. The broad view of the discipline, in the presenter's opinion, may help the people entering the field to avoid some mistakes which many of us made before them.
